SubtiBank SubtiBank
ydeB [2019-06-21 11:04:42]
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ydeB [2019-06-21 11:04:42]

similar to transcriptional regulator
locus
BSU05130
pI
7.33
mw
17.60 kDa
protein length
153 aa Sequence Blast
gene length
462 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

    • Gene

    Coordinates
    560,151 560,612

    The protein

    Structure

  • [PDB|4KBM] (from Mycobacterium tuberculosis, 35%) [pubmed|24055315]

    • Expression and Regulation

    Operons

    genes
    [gene|5251F15ECCB6043F1ED3D9AA1C2BB023FBA2D3A6|ydeB]
    description
    [pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-C129 (ydeB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2127 NBRP B. subtilis, Japan]
  • BKE05130 ([gene|5251F15ECCB6043F1ED3D9AA1C2BB023FBA2D3A6|ydeB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05130 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATCATCCACCTCCATAT, downstream forward: _UP4_TAGATACATCCCAAAAGATA
  • BKK05130 ([gene|5251F15ECCB6043F1ED3D9AA1C2BB023FBA2D3A6|ydeB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05130 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATCATCCACCTCCATAT, downstream forward: _UP4_TAGATACATCCCAAAAGATA

    • References

  • 23543716,24055315